1
2
3
4 tags = {}
5
6
7 tags['amber_converter_pdb_input_file'] = {'html' : 'node22.html'}
8 tags['amber_converter_netcdf_input_file'] = {'html' : 'node22.html'}
9 tags['amber_converter_time_step'] = {'html' : 'node22.html'}
10 tags['amber_converter_mmtk_netcdf_output_file'] = {'html' : 'node22.html'}
11
12
13 tags['charmm_converter_pdb_input_file'] = {'html' : 'node23.html'}
14 tags['charmm_converter_dcd_input_file'] = {'html' : 'node23.html'}
15 tags['charmm_converter_mmtk_netcdf_output_file'] = {'html' : 'node23.html'}
16
17
18 tags['dlpoly_converter_field_input_file'] = {'html' : 'node24.html'}
19 tags['dlpoly_converter_history_input_file'] = {'html' : 'node24.html'}
20 tags['dlpoly_converter_special_atoms'] = {'html' : 'node24.html'}
21 tags['dlpoly_converter_mmtk_netcdf_output_file'] = {'html' : 'node24.html'}
22
23
24 tags['discover_converter_xtd_xsd_input_file'] = {'html' : 'node25.html'}
25 tags['discover_converter_his_input_file'] = {'html' : 'node25.html'}
26 tags['discover_converter_subselection'] = {'html' : 'node25.html'}
27 tags['discover_converter_mmtk_netcdf_output_file'] = {'html' : 'node25.html'}
28
29
30 tags['forcite_converter_xtd_xsd_input_file'] = {'html' : 'node26.html'}
31 tags['forcite_converter_trj_input_file'] = {'html' : 'node26.html'}
32 tags['forcite_converter_subselection'] = {'html' : 'node26.html'}
33 tags['forcite_converter_mmtk_netcdf_output_file'] = {'html' : 'node26.html'}
34
35
36 tags['namd_converter_pdb_input_file'] = {'html' : 'node27.html'}
37 tags['namd_converter_dcd_input_file'] = {'html' : 'node27.html'}
38 tags['namd_converter_xst_input_file'] = {'html' : 'node27.html'}
39 tags['namd_converter_mmtk_netcdf_output_file'] = {'html' : 'node27.html'}
40
41
42 tags['vasp_converter_poscar_contcar_input_file'] = {'html' : 'node28.html'}
43 tags['vasp_converter_xdatcar_input_file'] = {'html' : 'node28.html'}
44 tags['vasp_converter_atom_contents'] = {'html' : 'node28.html'}
45 tags['vasp_converter_mmtk_netcdf_output_file'] = {'html' : 'node28.html'}
46
47
48 tags['frame_snapshot_mmtk_trajectory_file'] = {'html' : 'node29.html'}
49 tags['frame_snapshot_selected_frames'] = {'html' : 'node29.html'}
50 tags['frame_snapshot_pdb_output_file'] = {'html' : 'node29.html'}
51
52
53 tags['convert_netcdf_to_ascii_netcdf_input_file'] = {'html' : 'node30.html'}
54 tags['convert_netcdf_to_ascii_available_variables'] = {'html' : 'node30.html'}
55 tags['convert_netcdf_to_ascii_float_precision'] = {'html' : 'node30.html'}
56 tags['convert_netcdf_to_ascii_double_precision'] = {'html' : 'node30.html'}
57 tags['convert_netcdf_to_ascii_ascii_output_file'] = {'html' : 'node30.html'}
58
59
60 tags['convert_ascii_to_netcdf_ascii_input_file'] = {'html' : 'node31.html'}
61 tags['convert_ascii_to_netcdf_netcdf_output_file'] = {'html' : 'node31.html'}
62
63
64 tags['preferences_logfile_path'] = {'html' : 'node32.html'}
65 tags['preferences_trajfile_path'] = {'html' : 'node32.html'}
66 tags['preferences_outputfile_path'] = {'html' : 'node32.html'}
67 tags['preferences_acroread_path'] = {'html' : 'node32.html'}
68 tags['preferences_vmd_path'] = {'html' : 'node32.html'}
69 tags['preferences_ncdump_path'] = {'html' : 'node32.html'}
70 tags['preferences_ncgen_path'] = {'html' : 'node32.html'}
71 tags['preferences_progress_rate'] = {'html' : 'node32.html'}
72 tags['preferences_documentation_style'] = {'html' : 'node32.html'}
73 tags['preferences_warning_ncdump'] = {'html' : 'node32.html'}
74 tags['preferences_warning_ncgen'] = {'html' : 'node32.html'}
75 tags['preferences_warning_vmd'] = {'html' : 'node32.html'}
76 tags['preferences_warning_acroread'] = {'html' : 'node32.html'}
77
78
79 tags['msd_trajectory_file'] = {'html' : 'node53.html'}
80 tags['msd_frame_selection'] = {'html' : 'node53.html'}
81 tags['msd_project_displacement_on'] = {'html' : 'node53.html'}
82 tags['msd_subset_selection'] = {'html' : 'node53.html'}
83 tags['msd_deuteration_selection'] = {'html' : 'node53.html'}
84 tags['msd_weights'] = {'html' : 'node53.html'}
85 tags['msd_msd_output_file'] = {'html' : 'node53.html'}
86
87
88 tags['rmsd_trajectory_file'] = {'html' : 'node57.html'}
89 tags['rmsd_frame_selection'] = {'html' : 'node57.html'}
90 tags['rmsd_reference_frame'] = {'html' : 'node57.html'}
91 tags['rmsd_subset_selection'] = {'html' : 'node57.html'}
92 tags['rmsd_deuteration_selection'] = {'html' : 'node57.html'}
93 tags['rmsd_weights'] = {'html' : 'node57.html'}
94 tags['rmsd_rmsd_output_file'] = {'html' : 'node57.html'}
95
96
97 tags['rog_trajectory_file'] = {'html' : 'node61.html'}
98 tags['rog_frame_selection'] = {'html' : 'node61.html'}
99 tags['rog_subset_selection'] = {'html' : 'node61.html'}
100 tags['rog_deuteration_selection'] = {'html' : 'node61.html'}
101 tags['rog_weights'] = {'html' : 'node61.html'}
102 tags['rog_rog_output_file'] = {'html' : 'node61.html'}
103
104
105 tags['ac_trajectory_file'] = {'html' : 'node65.html'}
106 tags['ac_frame_selection'] = {'html' : 'node65.html'}
107 tags['ac_triplet_selection'] = {'html' : 'node65.html'}
108 tags['ac_atom_order'] = {'html' : 'node65.html'}
109 tags['ac_ac_output_file'] = {'html' : 'node65.html'}
110
111
112 tags['vacf_trajectory_file'] = {'html' : 'node69.html'}
113 tags['vacf_frame_selection'] = {'html' : 'node69.html'}
114 tags['vacf_differentiation_order'] = {'html' : 'node69.html'}
115 tags['vacf_project_displacement_on'] = {'html' : 'node69.html'}
116 tags['vacf_normalize'] = {'html' : 'node69.html'}
117 tags['vacf_subset_selection'] = {'html' : 'node69.html'}
118 tags['vacf_deuteration_selection'] = {'html' : 'node69.html'}
119 tags['vacf_weights'] = {'html' : 'node69.html'}
120 tags['vacf_vacf_output_file'] = {'html' : 'node69.html'}
121
122
123 tags['dos_trajectory_file'] = {'html' : 'node73.html'}
124 tags['dos_frame_selection'] = {'html' : 'node73.html'}
125 tags['dos_differentiation_order'] = {'html' : 'node73.html'}
126 tags['dos_project_displacement_on'] = {'html' : 'node73.html'}
127 tags['dos_fft_window'] = {'html' : 'node73.html'}
128 tags['dos_subset_selection'] = {'html' : 'node73.html'}
129 tags['dos_deuteration_selection'] = {'html' : 'node73.html'}
130 tags['dos_weights'] = {'html' : 'node73.html'}
131 tags['dos_dos_output_file'] = {'html' : 'node73.html'}
132
133
134 tags['pbft_trajectory_file'] = {'html' : 'node77.html'}
135 tags['pbft_frame_selection'] = {'html' : 'node77.html'}
136 tags['pbft_pass_band_filter'] = {'html' : 'node77.html'}
137 tags['pbft_subset_selection'] = {'html' : 'node77.html'}
138 tags['pbft_pbft_output_file'] = {'html' : 'node77.html'}
139
140
141 tags['gmft_trajectory_file'] = {'html' : 'node81.html'}
142 tags['gmft_frame_selection'] = {'html' : 'node81.html'}
143 tags['gmft_subset_selection'] = {'html' : 'node81.html'}
144 tags['gmft_gmft_output_file'] = {'html' : 'node81.html'}
145
146
147 tags['rbt_trajectory_file'] = {'html' : 'node88.html'}
148 tags['rbt_frame_selection'] = {'html' : 'node88.html'}
149 tags['rbt_reference_frame'] = {'html' : 'node88.html'}
150 tags['rbt_remove_translation'] = {'html' : 'node88.html'}
151 tags['rbt_stepwise_rbt'] = {'html' : 'node88.html'}
152 tags['rbt_group_selection'] = {'html' : 'node88.html'}
153 tags['rbt_rbt_output_file'] = {'html' : 'node88.html'}
154
155
156 tags['comt_trajectory_file'] = {'html' : 'node92.html'}
157 tags['comt_frame_selection'] = {'html' : 'node92.html'}
158 tags['comt_group_selection'] = {'html' : 'node92.html'}
159 tags['comt_comt_output_file'] = {'html' : 'node92.html'}
160
161
162 tags['ara_trajectory_file'] = {'html' : 'node101.html'}
163 tags['ara_frame_selection'] = {'html' : 'node101.html'}
164 tags['ara_differentiation_order'] = {'html' : 'node101.html'}
165 tags['ara_project_displacement_on'] = {'html' : 'node101.html'}
166 tags['ara_model_order'] = {'html' : 'node101.html'}
167 tags['ara_subset_selection'] = {'html' : 'node101.html'}
168 tags['ara_deuteration_selection'] = {'html' : 'node101.html'}
169 tags['ara_weights'] = {'html' : 'node101.html'}
170 tags['ara_ara_output_file'] = {'html' : 'node101.html'}
171
172
173 tags['qha_trajectory_file'] = {'html' : 'node105.html'}
174 tags['qha_frame_selection'] = {'html' : 'node105.html'}
175 tags['qha_temperature'] = {'html' : 'node105.html'}
176 tags['qha_subset_selection'] = {'html' : 'node105.html'}
177 tags['qha_qha_output_file'] = {'html' : 'node105.html'}
178
179
180 tags['rcf_trajectory_file'] = {'html' : 'node109.html'}
181 tags['rcf_frame_selection'] = {'html' : 'node109.html'}
182 tags['rcf_reference_frame'] = {'html' : 'node109.html'}
183 tags['rcf_stepwise_rbt'] = {'html' : 'node109.html'}
184 tags['rcf_wigner_indexes'] = {'html' : 'node109.html'}
185 tags['rcf_group_selection'] = {'html' : 'node109.html'}
186 tags['rcf_rcf_output_file'] = {'html' : 'node109.html'}
187
188
189 tags['avacf_trajectory_file'] = {'html' : 'node113.html'}
190 tags['avacf_frame_selection'] = {'html' : 'node113.html'}
191 tags['avacf_differentiation_order'] = {'html' : 'node113.html'}
192 tags['avacf_project_displacement_on'] = {'html' : 'node113.html'}
193 tags['avacf_reference_frame'] = {'html' : 'node113.html'}
194 tags['avacf_stepwise_rbt'] = {'html' : 'node113.html'}
195 tags['avacf_group_selection'] = {'html' : 'node113.html'}
196 tags['avacf_avacf_output_file'] = {'html' : 'node113.html'}
197
198
199 tags['ados_trajectory_file'] = {'html' : 'node117.html'}
200 tags['ados_frame_selection'] = {'html' : 'node117.html'}
201 tags['ados_differentiation_order'] = {'html' : 'node117.html'}
202 tags['ados_project_displacement_on'] = {'html' : 'node117.html'}
203 tags['ados_reference_frame'] = {'html' : 'node117.html'}
204 tags['ados_stepwise_rbt'] = {'html' : 'node117.html'}
205 tags['ados_fft_window'] = {'html' : 'node117.html'}
206 tags['ados_group_selection'] = {'html' : 'node117.html'}
207 tags['ados_ados_output_file'] = {'html' : 'node117.html'}
208
209
210 tags['dcsf_trajectory_file'] = {'html' : 'node123.html'}
211 tags['dcsf_frame_selection'] = {'html' : 'node123.html'}
212 tags['dcsf_qshell__values'] = {'html' : 'node123.html'}
213 tags['dcsf_qshell_width'] = {'html' : 'node123.html'}
214 tags['dcsf_qvectors_per_shell'] = {'html' : 'node123.html'}
215 tags['dcsf_qvectors_generator'] = {'html' : 'node123.html'}
216 tags['dcsf_qvectors_direction'] = {'html' : 'node123.html'}
217 tags['dcsf_fft_window'] = {'html' : 'node123.html'}
218 tags['dcsf_subset_selection'] = {'html' : 'node123.html'}
219 tags['dcsf_deuteration_selection'] = {'html' : 'node123.html'}
220 tags['dcsf_weights'] = {'html' : 'node123.html'}
221 tags['dcsf_dcsf_output_file'] = {'html' : 'node123.html'}
222
223
224 tags['dcsfar_trajectory_file'] = {'html' : 'node127.html'}
225 tags['dcsfar_frame_selection'] = {'html' : 'node127.html'}
226 tags['dcsfar_model_order'] = {'html' : 'node127.html'}
227 tags['dcsfar_qshell_values'] = {'html' : 'node127.html'}
228 tags['dcsfar_qshell_width'] = {'html' : 'node127.html'}
229 tags['dcsfar_qvectors_per_shell'] = {'html' : 'node127.html'}
230 tags['dcsfar_qvectors_generator'] = {'html' : 'node127.html'}
231 tags['dcsfar_qvectors_direction'] = {'html' : 'node127.html'}
232 tags['dcsfar_subset_selection'] = {'html' : 'node127.html'}
233 tags['dcsfar_deuteration_selection'] = {'html' : 'node127.html'}
234 tags['dcsfar_weights'] = {'html' : 'node127.html'}
235 tags['dcsfar_dcsfar_output_file'] = {'html' : 'node127.html'}
236
237
238 tags['disf_trajectory_file'] = {'html' : 'node131.html'}
239 tags['disf_frame_selection'] = {'html' : 'node131.html'}
240 tags['disf_qshell_values'] = {'html' : 'node131.html'}
241 tags['disf_qshell_width'] = {'html' : 'node131.html'}
242 tags['disf_qvectors_per_shell'] = {'html' : 'node131.html'}
243 tags['disf_qvectors_generator'] = {'html' : 'node131.html'}
244 tags['disf_qvectors_direction'] = {'html' : 'node131.html'}
245 tags['disf_fft_window'] = {'html' : 'node131.html'}
246 tags['disf_subset_selection'] = {'html' : 'node131.html'}
247 tags['disf_deuteration_selection'] = {'html' : 'node131.html'}
248 tags['disf_weights'] = {'html' : 'node131.html'}
249 tags['disf_disf_output_file'] = {'html' : 'node131.html'}
250
251
252 tags['disfar_trajectory_file'] = {'html' : 'node135.html'}
253 tags['disfar_frame_selection'] = {'html' : 'node135.html'}
254 tags['disfar_model_order'] = {'html' : 'node135.html'}
255 tags['disfar_qshell_values'] = {'html' : 'node135.html'}
256 tags['disfar_qshell_width'] = {'html' : 'node135.html'}
257 tags['disfar_qvectors_per_shell'] = {'html' : 'node135.html'}
258 tags['disfar_qvectors_generator'] = {'html' : 'node135.html'}
259 tags['disfar_qvectors_direction'] = {'html' : 'node135.html'}
260 tags['disfar_subset_selection'] = {'html' : 'node135.html'}
261 tags['disfar_deuteration_selection'] = {'html' : 'node135.html'}
262 tags['disfar_weights'] = {'html' : 'node135.html'}
263 tags['disfar_disfar_output_file'] = {'html' : 'node135.html'}
264
265
266 tags['disfg_trajectory_file'] = {'html' : 'node139.html'}
267 tags['disfg_frame_selection'] = {'html' : 'node139.html'}
268 tags['disfg_qshell_values'] = {'html' : 'node139.html'}
269 tags['disfg_fft_window'] = {'html' : 'node139.html'}
270 tags['disfg_subset_selection'] = {'html' : 'node139.html'}
271 tags['disfg_deuteration_selection'] = {'html' : 'node139.html'}
272 tags['disfg_weights'] = {'html' : 'node139.html'}
273 tags['disfg_disfg_output_file'] = {'html' : 'node139.html'}
274
275
276 tags['eisf_trajectory_file'] = {'html' : 'node143.html'}
277 tags['eisf_frame_selection'] = {'html' : 'node143.html'}
278 tags['eisf_qshell_values'] = {'html' : 'node143.html'}
279 tags['eisf_qshell_width'] = {'html' : 'node143.html'}
280 tags['eisf_qvectors_per_shell'] = {'html' : 'node143.html'}
281 tags['eisf_qvectors_generator'] = {'html' : 'node143.html'}
282 tags['eisf_qvectors_direction'] = {'html' : 'node143.html'}
283 tags['eisf_fft_window'] = {'html' : 'node143.html'}
284 tags['eisf_subset_selection'] = {'html' : 'node143.html'}
285 tags['eisf_deuteration_selection'] = {'html' : 'node143.html'}
286 tags['eisf_weights'] = {'html' : 'node143.html'}
287 tags['eisf_eisf_output_file'] = {'html' : 'node143.html'}
288
289
290 tags['scsf_trajectory_file'] = {'html' : 'node147.html'}
291 tags['scsf_frame_selection'] = {'html' : 'node147.html'}
292 tags['scsf_qshell_values'] = {'html' : 'node147.html'}
293 tags['scsf_qshell_width'] = {'html' : 'node147.html'}
294 tags['scsf_qvectors_per_shell'] = {'html' : 'node147.html'}
295 tags['scsf_qvectors_generator'] = {'html' : 'node147.html'}
296 tags['scsf_qvectors_direction'] = {'html' : 'node147.html'}
297 tags['scsf_fft_window'] = {'html' : 'node147.html'}
298 tags['scsf_subset_selection'] = {'html' : 'node147.html'}
299 tags['scsf_deuteration_selection'] = {'html' : 'node147.html'}
300 tags['scsf_weights'] = {'html' : 'node147.html'}
301 tags['scsf_scsf_output_file'] = {'html' : 'node147.html'}
302
303
304 tags['sscsf_trajectory_file'] = {'html' : 'node151.html'}
305 tags['sscsf_frame_selection'] = {'html' : 'node151.html'}
306 tags['sscsf_qshell_values'] = {'html' : 'node151.html'}
307 tags['sscsf_subset_selection'] = {'html' : 'node151.html'}
308 tags['sscsf_deuteration_selection'] = {'html' : 'node151.html'}
309 tags['sscsf_weights'] = {'html' : 'node151.html'}
310 tags['sscsf_disfg_output_file'] = {'html' : 'node151.html'}
311
312
313 tags['pdf_trajectory_file'] = {'html' : 'node156.html'}
314 tags['pdf_frame_selection'] = {'html' : 'node156.html'}
315 tags['pdf_distances_values'] = {'html' : 'node156.html'}
316 tags['pdf_subset_selection'] = {'html' : 'node156.html'}
317 tags['pdf_deuteration_selection'] = {'html' : 'node156.html'}
318 tags['pdf_weights'] = {'html' : 'node156.html'}
319 tags['pdf_pdf_output_file'] = {'html' : 'node156.html'}
320
321
322 tags['cn_trajectory_file'] = {'html' : 'node160.html'}
323 tags['cn_frame_selection'] = {'html' : 'node160.html'}
324 tags['cn_distances_values'] = {'html' : 'node160.html'}
325 tags['cn_group_selection'] = {'html' : 'node160.html'}
326 tags['cn_subset_selection'] = {'html' : 'node160.html'}
327 tags['cn_deuteration_selection'] = {'html' : 'node160.html'}
328 tags['cn_cn_output_file'] = {'html' : 'node160.html'}
329
330
331 tags['sd_trajectory_file'] = {'html' : 'node164.html'}
332 tags['sd_frame_selection'] = {'html' : 'node164.html'}
333 tags['sd_distances_values'] = {'html' : 'node164.html'}
334 tags['sd_theta_values'] = {'html' : 'node164.html'}
335 tags['sd_phi_values'] = {'html' : 'node164.html'}
336 tags['sd_triplet_selection'] = {'html' : 'node164.html'}
337 tags['sd_atom_order'] = {'html' : 'node164.html'}
338 tags['sd_group_selection'] = {'html' : 'node164.html'}
339 tags['sd_sd_output_file'] = {'html' : 'node164.html'}
340
341
342 tags['sfa_trajectory_file'] = {'html' : 'node168.html'}
343 tags['sfa_frame_selection'] = {'html' : 'node168.html'}
344 tags['sfa_sfa_output_file'] = {'html' : 'node168.html'}
345
346
347 tags['op_trajectory_file'] = {'html' : 'node173.html'}
348 tags['op_frame_selection'] = {'html' : 'node173.html'}
349 tags['op_bond_selection'] = {'html' : 'node173.html'}
350 tags['op_atom_order'] = {'html' : 'node173.html'}
351 tags['op_op_output_file'] = {'html' : 'node173.html'}
352
353
354 tags['opcm_trajectory_file'] = {'html' : 'node177.html'}
355 tags['opcm_frame_selection'] = {'html' : 'node177.html'}
356 tags['opcm_opcm_output_file'] = {'html' : 'node177.html'}
357
358
359 tags['animation_mmtk_trajectory_file'] = {'html' : 'node181.html'}
360 tags['animation_first_step'] = {'html' : 'node181.html'}
361 tags['animation_last_step'] = {'html' : 'node181.html'}
362 tags['animation_skip_step'] = {'html' : 'node181.html'}
363
364
365 tags['view_effective_modes_qha_input_file'] = {'html' : 'node182.html'}
366 tags['view_effective_modes_quasi_harmonic_mode'] = {'html' : 'node182.html'}
367 tags['view_effective_modes_amplitude'] = {'html' : 'node182.html'}
368 tags['view_effective_modes_number_of_frames'] = {'html' : 'node182.html'}
369
370
371
372 for k in tags.keys():
373 tags[k]['pdf'] = k
374