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nMOLDYN
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Class Hierarchy
nMOLDYN.Core.IOFiles.AmberNetCDFConverter
:
Converts an Amber NetCDF Trajectory into a MMTK NetCDFFile.
nMOLDYN.Analysis.Structure.Analysis
nMOLDYN.Analysis.Structure.Analysis
nMOLDYN.Analysis.Structure.Analysis
nMOLDYN.Analysis.Structure.Analysis
nMOLDYN.Analysis.Structure.Analysis
nMOLDYN.Analysis.Structure.Analysis
nMOLDYN.Analysis.Structure.Analysis
nMOLDYN.Analysis.Structure.Analysis
nMOLDYN.Analysis.Structure.Analysis
nMOLDYN.Analysis.Structure.Analysis
nMOLDYN.Analysis.Structure.Analysis
nMOLDYN.Analysis.Structure.Analysis
nMOLDYN.Analysis.Analysis.Analysis
:
Base class for all analysis defined in nMOLDYN.
nMOLDYN.Analysis.Structure.Analysis
nMOLDYN.Analysis.Structure.Analysis
nMOLDYN.Analysis.Structure.Analysis
nMOLDYN.Analysis.Structure.Analysis
nMOLDYN.Analysis.Structure.Analysis
nMOLDYN.Analysis.Structure.Analysis
nMOLDYN.Analysis.Structure.Analysis
nMOLDYN.Analysis.Structure.Analysis
nMOLDYN.Analysis.Structure.Analysis
nMOLDYN.Analysis.Structure.Analysis
nMOLDYN.Analysis.Structure.Analysis
nMOLDYN.Analysis.Structure.Analysis
nMOLDYN.Analysis.Structure.Analysis
nMOLDYN.Analysis.Structure.Analysis
nMOLDYN.Analysis.Structure.Analysis
nMOLDYN.Analysis.Structure.Analysis
nMOLDYN.Analysis.Structure.Analysis
nMOLDYN.Analysis.Structure.Analysis
nMOLDYN.Analysis.Structure.Analysis
nMOLDYN.Analysis.Structure.Analysis
nMOLDYN.Analysis.Structure.Analysis
nMOLDYN.Analysis.Structure.Analysis
nMOLDYN.Analysis.Structure.Analysis
nMOLDYN.Analysis.Structure.Analysis
nMOLDYN.Analysis.Structure.Analysis
nMOLDYN.Analysis.Structure.Analysis
nMOLDYN.Analysis.Structure.Analysis
nMOLDYN.Analysis.Structure.Analysis
nMOLDYN.Analysis.Structure.Analysis
nMOLDYN.Analysis.Structure.Analysis
nMOLDYN.Analysis.Structure.Analysis
nMOLDYN.Analysis.Structure.Analysis
nMOLDYN.Analysis.Structure.Analysis
nMOLDYN.Analysis.Structure.Analysis
nMOLDYN.Analysis.Structure.Analysis
nMOLDYN.Analysis.Structure.Analysis
nMOLDYN.Analysis.Structure.Analysis
nMOLDYN.Analysis.Structure.Analysis
nMOLDYN.Analysis.Structure.Analysis
nMOLDYN.Analysis.Structure.Analysis
nMOLDYN.Analysis.Structure.Analysis
nMOLDYN.Analysis.Structure.Analysis
nMOLDYN.Analysis.Structure.Analysis
nMOLDYN.Analysis.Structure.Analysis
nMOLDYN.Analysis.Structure.Analysis
nMOLDYN.Analysis.Dynamics.AngularVelocity
:
An intermediate class used by |AngularVelocityAutoCorrelationFunction| and |AngularDensityOfStates| classes.
nMOLDYN.Core.IOFiles.CHARMMConverter
:
Converts a CHARMM Trajectory into a MMTK NetCDFFile.
nMOLDYN.Core.IOFiles.DL_POLYConverter
:
Converts a DL_POLY Trajectory into a MMTK NetCDFFile.
nMOLDYN.GUI.HTMLReader.util.DataLoader
logging.Filterer
:
A base class for loggers and handlers which allows them to share common code.
Tkinter.Grid
:
Geometry manager Grid.
nMOLDYN.GUI.HTMLReader.mfxutil.KwStruct
nMOLDYN.Core.IOFiles.MaterialsStudioConverter
:
Converts a MaterialsStudio Discover or Forcite Trajectory into a MMTK NetCDFFile.
nMOLDYN.GUI.HTMLReader.tkwidget.MfxScrolledCanvas
nMOLDYN.GUI.HTMLReader.tkwidget.MfxTooltip
Tkinter.Misc
:
Internal class.
nMOLDYN.Core.IOFiles.NAMDConverter
:
Converts a NAMD Trajectory into a MMTK NetCDFFile.
formatter.NullWriter
:
Minimal writer interface to use in testing & inheritance.
Tkinter.Pack
:
Geometry manager Pack.
nMOLDYN.Analysis.Template.ParallelPerAtom
:
Template class for an analysis atom-by-atom ran in parallel mode.
nMOLDYN.Analysis.Template.ParallelPerFrame
:
Template class for an analysis frame-by-frame ran in parallel mode.
nMOLDYN.Analysis.Template.ParallelPerGroup
:
Template class for an analysis group-by-group ran in parallel mode.
nMOLDYN.Analysis.Template.ParallelPerQShell
:
Template class for an analysis qshell-by-qshell ran in parallel mode.
markupbase.ParserBase
:
Parser base class which provides some common support methods used by the SGML/HTML and XHTML parsers.
Tkinter.Place
:
Geometry manager Place.
nMOLDYN.Analysis.Analysis.QVectors
:
Generates a set of QVectors within a given shell.
nMOLDYN.Analysis.Template.SerialPerAtom
:
Template class for an analysis atom-by-atom ran in serial mode.
nMOLDYN.Analysis.Template.SerialPerFrame
:
Template class for an analysis atom-by-atom ran in serial mode.
nMOLDYN.Analysis.Template.SerialPerGroup
:
Template class for an analysis group-by-group ran in serial mode.
nMOLDYN.Analysis.Template.SerialPerQShell
:
Template class for an analysis qshell-by-qshell ran in serial mode.
nMOLDYN.GUI.HTMLReader.mfxutil.Struct
nMOLDYN.Core.IOFiles.TemporaryFile
:
Creates a temporary file used to monitor (progress, start, end ...) an analysis.
unittest.TestCase
:
A class whose instances are single test cases.
nMOLDYN.GUI.HTMLReader.util.Timer
nMOLDYN.GUI.Widgets.Toplevel
nMOLDYN.GUI.Widgets.Toplevel
nMOLDYN.GUI.Widgets.Toplevel
nMOLDYN.GUI.Widgets.Toplevel
nMOLDYN.GUI.Widgets.Toplevel
nMOLDYN.GUI.Widgets.Toplevel
nMOLDYN.GUI.Widgets.Toplevel
nMOLDYN.GUI.Widgets.Toplevel
nMOLDYN.GUI.Widgets.Toplevel
nMOLDYN.GUI.Widgets.Toplevel
nMOLDYN.GUI.Widgets.Toplevel
nMOLDYN.GUI.Widgets.Toplevel
nMOLDYN.GUI.Widgets.Toplevel
nMOLDYN.GUI.Widgets.Toplevel
nMOLDYN.Core.IOFiles.VASPConverter
:
Converts a VASP Trajectory into a MMTK NetCDFFile.
Tkinter.Wm
:
Provides functions for the communication with the window manager.
nMOLDYN.GUI.HTMLReader.tkwidget._ToplevelDialog
nMOLDYN.Core.Preferences.nMOLDYNPreferences.__Singleton
nMOLDYN.GUI.PreferencesDialog.dummy
object
:
The most base type
exceptions.BaseException
:
Common base class for all exceptions
exceptions.Exception
:
Common base class for all non-exit exceptions.
nMOLDYN.Core.IOFiles.EndOfFile
nMOLDYN.Core.Error.Error
exceptions.StandardError
:
Base class for all standard Python exceptions that do not represent interpreter exiting.
exceptions.AssertionError
:
Assertion failed.
nMOLDYN.GUI.HTMLReader.mfxutil.SubclassResponsibility
nMOLDYN.Core.IOFiles.DCDFile
:
Sets up a DCD file reader.
nMOLDYN.Core.IOFiles.FortranBinaryFile
:
Sets up a Fortran binary file reader.
float
:
float(x) -> floating point number
int
:
int(x[, base]) -> integer
nMOLDYN.Core.Preferences.nMOLDYNPreferences
:
Class whose attributes defines the nMOLDYN PREFERENCES variables.
nMOLDYN.GUI.HTMLReader.tkhtml.tkHTMLViewer
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