# Set of Tools to Data Analysis using Generalized Linear Models

## Documentation for package ‘glmtoolbox’ version 0.1.11

- DESCRIPTION file.

## Help Pages

A B C D E F G H L M O P Q R S T U V W Z

## -- A --

adjR2 | Adjusted R-squared
adjR2.glm | Adjusted R-squared in Generalized Linear Models
adjR2.gnm | Adjusted R-squared in Generalized Nonlinear Models
adjR2.lm | Adjusted R-squared in Normal Linear Models
advertising | Advertising
AGPC | AGPC for Generalized Estimating Equations
amenorrhea | amenorrhea
anova.glmgee | Comparison of nested Generalized Estimating Equations
anova.gnm | Comparison of nested models in Generalized Nonlinear Models.
anova.overglm | Comparison of nested models for alternatives to the Poisson and Binomial Regression Models under the presence of Overdispersion.
anova.zeroinflation | Comparison of nested models for Regression Models to deal with Zero-Excess in Count Data
anova2 | Comparison of nested Generalized Linear Models
aucuba | Lesions of Aucuba mosaic virus

## -- B --

bestSubset | Best Subset Selection
bladder | Bladder cancer in mice
BoxTidwell | Box-Tidwell transformations
BoxTidwell.glm | Box-Tidwell transformations in Generalized Linear Models
BoxTidwell.lm | Box-Tidwell transformations in Normal Linear Models
brains | Mammal brain and body weights

## -- C --

calls | Calls to a technical support help line
cellular | Agents to stimulate cellular differentiation
cholecystectomy | Shoulder Pain after Laparoscopic Cholecystectomy
CIC | Correlation Information Criterion for Generalized Estimating Equations
confint.gnm | Confidence Intervals for Generalized Nonlinear Models
confint2 | Confidence Intervals for Generalized Linear Models
cooks.distance.glmgee | Cook's Distance for Generalized Estimating Equations
cooks.distance.gnm | Cook's Distance for Generalized Nonlinear Models
cooks.distance.overglm | Cook's Distance for alternatives to the Poisson and Binomial Regression Models under the presence of Overdispersion
cooks.distance.zeroinflation | Cook's Distance for Regression Models to deal with Zero-Excess in Count Data
Cortisol | Radioimmunological Assay of Cortisol
coupons | Discount coupons

## -- D --

depression | Treatment for severe postnatal depression
dfbeta.glmgee | Dfbeta for Generalized Estimating Equations
dfbeta.gnm | Dfbeta statistic for Generalized Nonlinear Models
dfbeta.overglm | Dfbeta statistic for alternatives to the Poisson and Binomial Regression Models under the presence of Overdispersion.
dfbeta.zeroinflation | Dfbeta statistic for Regression Models to deal with Zero-Excess in Count Data
dilution | Dilution Assay
Drosophila | Developmental rate of Drosophila melanogaster

## -- E --

envelope | Normal QQ-plot with simulated envelope of model residuals
envelope.glm | Normal QQ-plot with simulated envelope of residuals in Generalized Linear Models
envelope.gnm | Normal QQ-plot with simulated envelope of residuals in Generalized Nonlinear Models
envelope.lm | Normal QQ-plot with simulated envelope of residuals for normal linear models
envelope.overglm | Normal QQ-plot with Simulated Envelope of Residuals for alternatives to the Poisson and Binomial Regression Models under the presence of Overdispersion
envelope.zeroinflation | Normal QQ-plot with Simulated Envelope of Residuals for Regression Models to deal with Zero-Excess in Count Data
estequa | Function to extract estimating equations
estequa.glm | Estimating Equations in Generalized Linear Models
estequa.glmgee | Estimating Equations in Generalized Estimating Equations
estequa.overglm | Estimating Equations for alternatives to the Poisson and Binomial Regression Models under the presence of Overdispersion.
estequa.zeroinflation | Estimating Equations in Regression Models to deal with Zero-Excess in Count Data

## -- F --

fabric | Fabric faults
FisherScoring | Fisher Scoring algorithm in Generalized Linear Models

## -- G --

GHYC | Gosho-Hamada-Yoshimura's Criterion for Generalized Estimating Equations
glmgee | Fit Generalized Estimating Equations
gnm | Generalized Nonlinear Models.
gnmgee | Fit Nonlinear Generalized Estimating Equations
Grass | The effects of fertilizers on coastal Bermuda grass
GUIDE | Guidelines for Urinary Incontinence Discussion and Evaluation
gvif | Generalized Variance Inflation Factor
gvif.glm | Generalized Variance Inflation Factor
gvif.lm | Generalized Variance Inflation Factor
gvif.overglm | Generalized Variance Inflation Factor for alternatives to the Poisson and Binomial Regression Models under the presence of Overdispersion

## -- H --

hltest | The Hosmer-Lemeshow Goodness-of-Fit Test

## -- L --

ldh | ldh
leverage | Leverage
leverage.glmgee | Leverage for Generalized Estimating Equations
liver | Liver cancer in mice
localInfluence | Local Influence
localInfluence.glm | Local Influence for Generalized Linear Models
localInfluence.glmgee | Local Influence for Generalized Estimating Equations
localInfluence.gnm | Local Influence for Generalized Nonlinear Models
localInfluence.overglm | Local Influence for alternatives to the Poisson and Binomial Regression Models under the presence of Overdispersion

## -- M --

mammary | Ability of retinyl acetate to prevent mammary cancer in rats
Melanopus | Assay of an Insecticide with a Synergist

## -- O --

Oranges | Oranges
orobanche | Germination of Orobanche Seeds
ossification | Teratogenic effects of phenytoin and trichloropropene oxide
overglm | Alternatives to the Poisson and Binomial Regression Models under the presence of Overdispersion.

## -- P --

PAC | Pardo-Alonso's Criterion for Generalized Estimating Equations
pipeline | Alaska pipeline
predict.glmgee | Predictions for Generalized Estimating Equations

## -- Q --

QIC | QIC for Generalized Estimating Equations

## -- R --

rabbits | Age and Eye Lens Weight of Rabbits in Australia
races | Hill races in Scotland
residuals.glmgee | Residuals for Generalized Estimating Equations
residuals.gnm | Residuals for Generalized Nonlinear Models
residuals.overglm | Residuals for alternatives to the Poisson and Binomial Regression Models under the presence of Overdispersion.
residuals.zeroinflation | Residuals in Regression Models to deal with Zero-Excess in Count Data
residuals2 | Residuals for Linear and Generalized Linear Models
richness | Species richness
rinse | Dental Clinical Trial
RJC | Rotnitzky–Jewell's Criterion for Generalized Estimating Equations
ROCc | The Receiver Operating Characteristic (ROC) Curve

## -- S --

Seizures | Seizures
SGPC | SGPC for Generalized Estimating Equations
shelflife | Shelf life of a photographic developer
skincancer | Skin cancer in women
spruces | Effect of ozone-enriched atmosphere on growth of sitka spruces
Steel | Hardened Steel
stepCriterion | Variable selection in regression models from a chosen criterion
stepCriterion.glm | Variable Selection in Generalized Linear Models
stepCriterion.glmgee | Variable selection in Generalized Estimating Equations
stepCriterion.lm | Variable Selection in Normal Linear Models
stepCriterion.overglm | Variable selection for alternatives to the Poisson and Binomial Regression Models under the presence of Overdispersion
swimmers | Self diagnozed ear infections in swimmers

## -- T --

Trajan | Roots Produced by the Columnar Apple Cultivar Trajan.

## -- U --

uti | Urinary Tract Infections in HIV-infected Men

## -- V --

vcov.glmgee | Estimate of the variance-covariance matrix in GEEs
vdtest | Test for Varying Dispersion Parameter
vdtest.glm | Test for Varying Dispersion Parameter in Generalized Linear Models
vdtest.gnm | Test for Varying Dispersion Parameter in Generalized Nonlinear Models
vdtest.lm | Test for Varying Dispersion Parameter in Normal Linear Models

## -- W --

wglmgee | Fit Weighted Generalized Estimating Equations

## -- Z --

zero.excess | Test for zero-excess in Count Regression Models
zeroalt | Zero-Altered Regression Models to deal with Zero-Excess in Count Data
zeroinf | Zero-Inflated Regression Models to deal with Zero-Excess in Count Data